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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3875006_3875621_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3875006 - 3875621
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ACGCTGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
ACCATCTGACAT
Flanking Amino Acid:
DEVVLMKILQVLRTLLLTPV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
72.2
0.5
1
65
40.6
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
42.5
-0.4
1.7
52.53
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012179
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012766
3839370 - 3927262
87893