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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_39498_42172_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39498 - 42172
Intron Length:
2675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTGTCTATTACA
Flanking Amino Acid:
EIWHLLKIACTQSSSRSLVS
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.4
67.1
44.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
37
-1.5
2.7
41.4
38.2
Minor BPS
55.7
0.17
1.9
72.06
39.9

Associated Gene:

Gene:
CHUK
Ensembl Gene ID:
ENSAPLG00000011503
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039931
12183 - 46227
34045
ENSAPLT00000037450
14485 - 44896
30412
ENSAPLT00000012207
12183 - 45972
33790