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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3959324_3963554_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3959324 - 3963554
Intron Length:
4231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GTTTCCCTCACA
Flanking Amino Acid:
EHSCKGQDHSDTEKSQQNQT
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
79.3
0.66
0.8
72.8
32.1
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
60.2
0.31
2.1
77.12
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028393
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037034
3959183 - 3966306
7124