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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3971727_3972390_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3971727 - 3972390
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCGTCCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTTACCTGACTA
Flanking Amino Acid:
LFAMSKVLELGDTVFIVLRK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
54.5
0.1
1
50.9
31.7
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
58
0.25
1.8
73.09
38.9

Associated Gene:

Gene:
ELOVL3
Ensembl Gene ID:
ENSAPLG00000011982
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012464
3971305 - 3976524
5220