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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3972543_3973557_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3972543 - 3973557
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
GCCTTCAGATCT
Flanking Amino Acid:
TLWSLGLALFSAIGSHRTWK
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
74.1
0.6
1
69
38.9
Major PPT
83.3
0.75
0.9
77.3
37
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
43.5
-0.4
1.9
57.9
44.8

Associated Gene:

Gene:
ELOVL3
Ensembl Gene ID:
ENSAPLG00000011982
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012464
3971305 - 3976524
5220