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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3987589_3988530_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3987589 - 3988530
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
AGATTGACAATT
Flanking Amino Acid:
QAVVTVISDPSYRKAAKLIS
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
89.2
0.88
0.6
84.3
23.5
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
40.3
-0.6
2.2
57
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011857
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012340
3987273 - 3992946
5674