About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3988751_3989160_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3988751 - 3989160
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGGCACTGACCT
Flanking Amino Acid:
MGWLPQNDLLGHPNVKAFVS
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
83.2
0.75
0.8
77.3
31.5
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
44.5
-0.3
1.9
59.03
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011857
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012340
3987273 - 3992946
5674