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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3989238_3989400_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3989238 - 3989400
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCT
Flanking Amino Acid:
FARLPQRVVWRYFGQKPRNL
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.2
0.61
0.7
72.8
25.6
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
74.5
0.85
1.5
91.05
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011857
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012340
3987273 - 3992946
5674