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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3989541_3992103_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3989541 - 3992103
Intron Length:
2563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
AAGACTTCAAGG
Flanking Amino Acid:
LAEPAKPLPVGLRLWVEAAD
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
80.5
0.69
0.9
74
36.8
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
44.2
-0.5
1.8
43.86
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011857
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012340
3987273 - 3992946
5674