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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4000858_4001252_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4000858 - 4001252
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
TPHTVPKVKRAASPFRRVRE
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.5
0.84
0.8
84.9
28.4
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
NOLC1
Ensembl Gene ID:
ENSAPLG00000011816
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012300
4000334 - 4009388
9055