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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4001366_4002022_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4001366 - 4002022
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAGTC
5'SS Class:
major
3'SS Sequence:
CTACATCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTCAGTTTTACT
Flanking Amino Acid:
SEEEKGKANGGMIGKKRKRE
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
67.9
35.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
67.8
0.4
1
62
38.2
Minor 5ss
41.1
-1
3.4
59.1
45.7
Minor BPS
49.2
0.02
2.1
72.32
44.7

Associated Gene:

Gene:
NOLC1
Ensembl Gene ID:
ENSAPLG00000011816
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012300
4000334 - 4009388
9055