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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4002946_4004752_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4002946 - 4004752
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AGATTATTAACT
Flanking Amino Acid:
KAESSSDSDSDSSSEDEKKV
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
79.8
0.67
0.8
80.2
31.9
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
64.7
0.54
1.6
77.4
38.2

Associated Gene:

Gene:
NOLC1
Ensembl Gene ID:
ENSAPLG00000011816
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012300
4000334 - 4009388
9055