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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4004843_4005240_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4004843 - 4005240
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATGTTAGACT
Flanking Amino Acid:
AEQVPPKGGTGKAAVAKTIP
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.9
0.74
0.8
76.8
31.8
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
47.8
-0
2.1
68.13
43.1

Associated Gene:

Gene:
NOLC1
Ensembl Gene ID:
ENSAPLG00000011816
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012300
4000334 - 4009388
9055