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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4006376_4006770_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4006376 - 4006770
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCGATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ATGATTTTAAGT
Flanking Amino Acid:
SDEEKAAPKKVVPKKPPPKP
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.3
33.9
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
55.3
0.12
1.2
60.6
39.4
Minor 5ss
38.9
-1.2
2.9
48.7
47.5
Minor BPS
55.6
0.25
1.6
70.07
41.4

Associated Gene:

Gene:
NOLC1
Ensembl Gene ID:
ENSAPLG00000011816
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012300
4000334 - 4009388
9055