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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4009041_4009126_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4009041 - 4009126
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CGCCTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGGAG
U12 Branch Point Sequence:
TTCGCCTTCCCG
Flanking Amino Acid:
SLLDIFSYWLQSPAAKKRKL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
57.2
42.1
Major BPS
36
-0.8
1.7
28.5
45.1
Major PPT
71
0.47
0.8
64.8
30.8
Minor 5ss
28.8
-2.4
3.1
36.7
41.6
Minor BPS
39.9
-0.9
3.6
58.36
49.2

Associated Gene:

Gene:
NOLC1
Ensembl Gene ID:
ENSAPLG00000011816
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012300
4000334 - 4009388
9055