About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4018651_4033550_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4018651 - 4033550
Intron Length:
14900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TATGCTTTATTT
Flanking Amino Acid:
LEAVKKAISEDSGCDSVTDT
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
60.6
0.41
1.7
76.5
40.9

Associated Gene:

Gene:
PIK3AP1
Ensembl Gene ID:
ENSAPLG00000011139
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011654
4018215 - 4057390
39176