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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_402296_413594_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
402296 - 413594
Intron Length:
11299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCTCTCCATT
Flanking Amino Acid:
GHAKAPFTCHVLKGKMVHAE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
64.3
41.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
87.7
0.85
0.8
88.9
28.2
Minor 5ss
31.6
-2.1
3.2
36.4
41.9
Minor BPS
48.1
-0
1.9
68.82
42.7

Associated Gene:

Gene:
ATAD1
Ensembl Gene ID:
ENSAPLG00000001653
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038786
402178 - 428029
25852