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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4030518_4033550_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4030518 - 4033550
Intron Length:
3033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
TGCTTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TATGCTTTATTT
Flanking Amino Acid:
MEKLNSDSGCDSVTDT
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
60.6
0.41
1.7
76.5
40.9

Associated Gene:

Gene:
PIK3AP1
Ensembl Gene ID:
ENSAPLG00000011139
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044355
4030499 - 4058542
28044