Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4033700_4036640_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4033700 - 4036640

Intron Length:

2941

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTACTGTAT

5'SS Class:

major

3'SS Sequence:

CTTTCTCTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TATTGTGAAACT

Flanking Amino Acid:

VVQPDRIRCGVQTTIYIIMK

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.1

0.29

1.2

59.6

41.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

81.8

0.72

0.7

24.1

Minor 5ss

-1.5

3.5

46.5

48.8

Minor BPS

45.3

-0.2

2.5

72.26

Associated Gene:

Gene:

PIK3AP1

Ensembl Gene ID:

ENSAPLG00000011139

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044355

4030499 - 4058542

28044

ENSAPLT00000011654

4018215 - 4057390

39176