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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4057387_4058449_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4057387 - 4058449
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ACTTTTTTAATG
Flanking Amino Acid:
PPRVPPRGASRPISSEGLYP
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.5
0.78
0.7
80.1
32
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
67.2
0.4
1.3
64.47
38.5

Associated Gene:

Gene:
PIK3AP1
Ensembl Gene ID:
ENSAPLG00000011139
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044355
4030499 - 4058542
28044