Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4069168_4069215_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4069168 - 4069215

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAATATTT

5'SS Class:

weak_major

3'SS Sequence:

CAGTCAGATGTAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

ACCTCGTTCACA

Flanking Amino Acid:

VGEGVVLAEAFASSDCKSLQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.1

69.1

35.8

Major BPS

77.7

0.69

83.3

27.7

Major PPT

54.9

0.11

47.9

39.4

Minor 5ss

46.5

-0.4

3.1

71.5

39.6

Minor BPS

47.7

-0.1

2.4

60.87

45.5

Associated Gene:

Gene:

TM9SF3

Ensembl Gene ID:

ENSAPLG00000010601

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011082

4069121 - 4104440

35320