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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4070319_4076776_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4070319 - 4076776
Intron Length:
6458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAATCATTAACA
Flanking Amino Acid:
EFSGLDIKFKDDVMQTTYCE
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
68.7
0.58
1.6
73.9
36.6

Associated Gene:

Gene:
TM9SF3
Ensembl Gene ID:
ENSAPLG00000010601
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047549
4068510 - 4104440
35931
ENSAPLT00000011082
4069121 - 4104440
35320