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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4090128_4097712_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4090128 - 4097712
Intron Length:
7585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTTTTAAAA
Flanking Amino Acid:
ASRAIPFGTMVAVCCICFFV
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.7
84.6
29.1
Minor 5ss
30.6
-2.2
2.9
38
41
Minor BPS
70
0.62
1.3
75.65
35.9

Associated Gene:

Gene:
TM9SF3
Ensembl Gene ID:
ENSAPLG00000010601
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011082
4069121 - 4104440
35320
ENSAPLT00000047549
4068510 - 4104440
35931