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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4099655_4100080_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4099655 - 4100080
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
GCATGTTTACTT
Flanking Amino Acid:
YFLLNAEDYRWQWTSFLSAA
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
79.2
0.72
1
75
40
Major PPT
85.1
0.79
0.8
82.1
34.6
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
46.7
-0.1
2
60.56
43.9

Associated Gene:

Gene:
TM9SF3
Ensembl Gene ID:
ENSAPLG00000010601
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047549
4068510 - 4104440
35931
ENSAPLT00000011082
4069121 - 4104440
35320