About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4100165_4100268_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4100165 - 4100268
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ACTAGCATAATT
Flanking Amino Acid:
YSFYYYFFKTKMYGLFQTSF
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
48.3
-0
2
67.91
43.1

Associated Gene:

Gene:
TM9SF3
Ensembl Gene ID:
ENSAPLG00000010601
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047549
4068510 - 4104440
35931
ENSAPLT00000011082
4069121 - 4104440
35320