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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4144547_4164116_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4144547 - 4164116
Intron Length:
19570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
GCGTACTCACCA
Flanking Amino Acid:
HSDGNARHTSGGLGEQSVAP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
45.2
-0.3
2
53.22
44.7

Associated Gene:

Gene:
TLL2
Ensembl Gene ID:
ENSAPLG00000009874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044124
4139595 - 4195199
55605