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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4164192_4166672_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4164192 - 4166672
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAGGATTTAAAT
Flanking Amino Acid:
STDSKKAVKKDGRQNTTLVR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
54.1
45.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.2
0.72
0.8
76.3
32.3
Minor 5ss
35.8
-1.6
3.2
38.3
46.7
Minor BPS
48
-0
1.7
60.11
43

Associated Gene:

Gene:
TLL2
Ensembl Gene ID:
ENSAPLG00000009874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044124
4139595 - 4195199
55605