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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4169552_4174515_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4169552 - 4174515
Intron Length:
4964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTACTTCACTA
Flanking Amino Acid:
IMHYARNTFSRGVFLDTILP
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83.3
0.75
0.6
82
22.8
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
47.5
-0.1
1.8
59.65
41

Associated Gene:

Gene:
TLL2
Ensembl Gene ID:
ENSAPLG00000009874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044124
4139595 - 4195199
55605
ENSAPLT00000028100
4140544 - 4198383
57840
ENSAPLT00000010332
4144366 - 4198383
54018