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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4180154_4181658_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4180154 - 4181658
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAGTTCCTATTC
Flanking Amino Acid:
WRISVTPGEKIMLNFTSMDL
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.9
0.83
0.7
84.6
30.3
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
48
-0.1
1.9
59.59
39.9

Associated Gene:

Gene:
TLL2
Ensembl Gene ID:
ENSAPLG00000009874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028100
4140544 - 4198383
57840
ENSAPLT00000010332
4144366 - 4198383
54018
ENSAPLT00000044124
4139595 - 4195199
55605