About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4184653_4188753_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4184653 - 4188753
Intron Length:
4101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCCT
5'SS Class:
major
3'SS Sequence:
GTTTTTTACGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGTTTTTTACG
Flanking Amino Acid:
LGKGFFVVYEAICGGEIHKD
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.5
44
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
69.4
0.44
1.1
71.9
37.4
Minor 5ss
31.7
-2.1
3.6
48.5
47.2
Minor BPS
59.9
0.17
1.7
66.27
42

Associated Gene:

Gene:
TLL2
Ensembl Gene ID:
ENSAPLG00000009874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044124
4139595 - 4195199
55605
ENSAPLT00000028100
4140544 - 4198383
57840
ENSAPLT00000010332
4144366 - 4198383
54018