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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4211950_4212383_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4211950 - 4212383
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACTC
5'SS Class:
major
3'SS Sequence:
CTTCTCTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTCTCTTGACA
Flanking Amino Acid:
LLLLKYPHIQEKVQEEIDRV
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
61
44.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
79
0.65
0.9
75.6
32.9
Minor 5ss
41
-1
3.4
59.9
44.6
Minor BPS
70.6
0.64
1.2
75.39
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027313
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030390
4209754 - 4215382
5629