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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4212526_4213059_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4212526 - 4213059
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GCGTTTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
CTCAGTTCAACC
Flanking Amino Acid:
IDCFLSKMQEEKDNPNSSFH
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
61.3
0.28
1
62
30.6
Major PPT
73.8
0.53
0.9
65.9
40.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
45.7
-0.3
2
54.57
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027313
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030390
4209754 - 4215382
5629