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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4213237_4213480_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4213237 - 4213480
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCA
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAG
U12 Branch Point Sequence:
ATTCTACTAAGA
Flanking Amino Acid:
FEMLSSRWGQLYQMFPEILD
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
68.8
38.9
Major BPS
62.8
0.32
1.5
69.9
35.3
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
45
-0.5
2.8
59.8
44.6
Minor BPS
44.7
-0.4
2.1
61.03
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027313
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030390
4209754 - 4215382
5629