About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4213642_4214033_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4213642 - 4214033
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATAGCCT
5'SS Class:
weak_major
3'SS Sequence:
TCTGAACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTTTCTGAACT
Flanking Amino Acid:
HLLEELRKTKKMPFDPTFML
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.6
0.04
1.1
46.7
41.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
69.6
0.44
0.9
61.6
38.8
Minor 5ss
40.1
-1.1
3.4
52.9
45
Minor BPS
75.4
0.88
1.4
88.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027313
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030390
4209754 - 4215382
5629