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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4220256_4220568_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4220256 - 4220568
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GCATGCTGAAGC
Flanking Amino Acid:
GNVSFVLTAWDTEGKAHALH
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.3
39.5
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
78.1
0.63
0.8
70.2
36.5
Minor 5ss
31.6
-2.1
3.1
31.9
42.5
Minor BPS
45
-0.4
2.1
52.69
44.4

Associated Gene:

Gene:
ZP4
Ensembl Gene ID:
ENSAPLG00000002531
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002543
4220057 - 4224532
4476