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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4220691_4220769_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4220691 - 4220769
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCTGCCCTGACT
Flanking Amino Acid:
SYTSCYVFEWDGNYLMIVGL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.8
0.49
0.9
62.4
39.8
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
55.7
0.26
1.8
72.78
44.1

Associated Gene:

Gene:
ZP4
Ensembl Gene ID:
ENSAPLG00000002531
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002543
4220057 - 4224532
4476