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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4220873_4221198_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4220873 - 4221198
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTACCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAAAA
Flanking Amino Acid:
KLLRCPVDLPALDAPSSSVC
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79
0.65
0.8
72.9
31.6
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
64.1
0.44
1.5
73.17
38.4

Associated Gene:

Gene:
ZP4
Ensembl Gene ID:
ENSAPLG00000002531
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002543
4220057 - 4224532
4476