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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4221355_4221723_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4221355 - 4221723
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TCTCCCTGAACT
Flanking Amino Acid:
RVKTCYYGNTVTAHCTPDGQ
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
85.9
0.81
0.8
77.9
36.6
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
74.3
0.84
1.4
86.75
38.6

Associated Gene:

Gene:
ZP4
Ensembl Gene ID:
ENSAPLG00000002531
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002543
4220057 - 4224532
4476