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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4222638_4222834_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4222638 - 4222834
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
GTGCTCTAAAAT
Flanking Amino Acid:
PLSLELRVASDKSYSSYYTD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
73
0.57
1
73.6
28.6
Major PPT
84
0.77
0.7
76.7
31.9
Minor 5ss
38.2
-1.3
3.4
56.2
48
Minor BPS
49.7
0.06
1.8
67.07
43.3

Associated Gene:

Gene:
ZP4
Ensembl Gene ID:
ENSAPLG00000002531
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002543
4220057 - 4224532
4476