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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4223905_4224210_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4223905 - 4224210
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TGCTATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TCACCTAAAACT
Flanking Amino Acid:
SCTTTCPAGARGKRSADHNI
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
74.6
0.55
0.9
68.4
37.2
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
47.9
-0
1.9
67.01
43.6

Associated Gene:

Gene:
ZP4
Ensembl Gene ID:
ENSAPLG00000002531
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002543
4220057 - 4224532
4476