About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_426820_427364_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
426820 - 427364
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
CATTCTTCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
EYVNSACEEDNHDEDEIRPV
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
34.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.2
0.48
1
71.8
32.7
Minor 5ss
41.8
-0.9
3
53.3
38
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
ATAD1
Ensembl Gene ID:
ENSAPLG00000001653
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001954
412823 - 428835
16013
ENSAPLT00000044155
412823 - 431340
18518
ENSAPLT00000038786
402178 - 428029
25852