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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_427471_427894_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
427471 - 427894
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTTATATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
DATLQNVLMHT*
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
78.2
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
78.8
33.7
Minor 5ss
42.6
-0.8
2.8
55.7
41.7
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
ATAD1
Ensembl Gene ID:
ENSAPLG00000001653
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038786
402178 - 428029
25852