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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_427471_431316_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
427471 - 431316
Intron Length:
3846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CAATTATAAATT
Flanking Amino Acid:
DATLQNVLMHVPARGPE*
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
78.2
31.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
42.6
-0.8
2.8
55.7
41.7
Minor BPS
47.4
-0.1
1.9
62.43
41.9

Associated Gene:

Gene:
ATAD1
Ensembl Gene ID:
ENSAPLG00000001653
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044155
412823 - 431340
18518