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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4283506_4284899_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4283506 - 4284899
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTGTGTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GCTTATGTATTT
Flanking Amino Acid:
YQVEGMEWLRMLWENGINGI
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
77.9
0.63
1
72.9
42.2
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
42.7
-0.4
2.2
60.8
43.6

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771