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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4285083_4285356_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4285083 - 4285356
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTTTATTCAACT
Flanking Amino Acid:
MSEFKRFTPEIPIMLYHGAQ
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
90.5
0.91
0.7
89.1
27.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
62.4
0.47
1.8
81.08
40.7

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771