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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4286287_4286998_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4286287 - 4286998
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTTGTTTTTATA
Flanking Amino Acid:
LLPDVFDDLKSFESWFDITS
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
88.1
0.86
0.7
84.2
30.9
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
55.5
0.17
1.7
69.65
37.1

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771