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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4287096_4288009_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4287096 - 4288009
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTCATT
5'SS Class:
weak_major
3'SS Sequence:
CTCAACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATAACACAACT
Flanking Amino Acid:
EQNILHMLHQILTPFLLRRL
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.29
1.2
68.4
42
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
71.1
0.48
0.9
66.2
39.1
Minor 5ss
47.8
-0.2
2.5
67.3
43.4
Minor BPS
48.4
-0
2
73.2
42.4

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771