Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4290039_4291231_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4290039 - 4291231

Intron Length:

1193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTATA

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCTTCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CCCTCTTCTAAG

Flanking Amino Acid:

PLDPATQQFKVDEDLVKNSG

Intron Amino Acid Position:

529

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

87.3

29.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

0.36

69.9

28.2

Minor 5ss

38.2

-1.3

45.5

Minor BPS

41.4

-0.8

1.9

39.92

44.1

Associated Gene:

Gene:

HELLS

Ensembl Gene ID:

ENSAPLG00000002649

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002725

4279332 - 4300102

20771