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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4294700_4295321_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4294700 - 4295321
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTGA
5'SS Class:
major
3'SS Sequence:
CTTATCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTCTCTAACT
Flanking Amino Acid:
DTVIIYDSDWNPQSDLQAQD
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.6
40.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.6
0.67
0.8
77.2
31.4
Minor 5ss
45.2
-0.5
2.5
49.4
46.8
Minor BPS
79
0.99
1.5
96.75
28

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771