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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4295482_4298452_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4295482 - 4298452
Intron Length:
2971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
CTACTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CTCCACTTAAAA
Flanking Amino Acid:
RKLEKLIIHKNQFKGGKSGL
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
80.2
32.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
81.7
0.71
0.8
76.1
32.3
Minor 5ss
38.4
-1.3
2.7
48.1
34
Minor BPS
54.7
0.14
1.7
63.19
42.6

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771